BioInfer

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BioInfer: Bio Information Extraction Resource

Biomedical Information Extraction Resource (BioInfer) is a public resource providing a manually annotated corpus and related resources for information extraction in the biomedical domain.

The corpus contains sentences from abstracts of biomedical research articles annotated for relationships, named entities, as well as syntactic dependencies. Supporting software is provided with the corpus. The corpus is unique in the domain in combining these annotation types for a single set of sentences, and in the level of detail of the relationship annotation.

On the unification of syntactic annotations under the Stanford dependency scheme: A case study on BioInfer and GENIA

Pyysalo, S., F. Ginter, K. Haverinen, J. Heimonen, T. Salakoski, and V. Laippala, "On the unification of syntactic annotations under the Stanford dependency scheme: A case study on BioInfer and GENIA", Proceedings of the Workshop on BioNLP 2007: Biological, translational, and clinical language processing: Association for Computational Linguistics, pp. 25–32, 2007.
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