Shared tasks, BioNLP 2011, BioCreative, BioNLP 2009, TREC Genomics, i2b2 Challenges, i2b2 2011, i2b2 2010, i2b2 2009

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i2b2 2009 Medication

Announcement of Data Release and Call for Participation
Third i2b2 Shared-Task and Workshop
Challenges in Natural Language Processing for Clinical Data
Medication Extraction Challenge
Data Release: 1 June, 2009
Evaluation: 17 August, 2009 (9:00am EST) to 19 August, 2009 (11:59pm EST)
Workshop: 13 November, 2009 in San Francisco, CA
Organizer: Informatics for Integrating Biology and the Bedside, i2b2, a National Center for Biomedical Computing

i2b2 2010 Relations

Announcement of Data Release and Call for Participation
Fourth i2b2/VA Shared-Task and Workshop
Challenges in Natural Language Processing for Clinical Data
Data Release: 15 April, 2010
Evaluation: 22-24 July, 2010
Paper Submission: 1 September, 2010
Workshop: November, 2010 in Washington, DC

The fourth i2b2/VA challenge is a three tiered challenge that studies:
- extraction of medical problems, tests, and treatments
- classification of assertions made on medical problems
- relations of medical problems, tests, and treatments

i2b2 2011

Announcement of Data Release and Call for Participation
2011 i2b2/VA/Cincinnati Shared-Tasks and Workshop
i2b2/VA Track on Challenges in Natural Language Processing for Clinical Data
Tentative Timeline
Training Data Release: 1 June, 2011
Test Data Release: 1 August, 2011
System Outputs Due: 3 August, 2011
Paper Submission: 1 September, 2011
Workshop: October, 2011 in Washington, DC

TREC Genomics Track

The TREC Genomics Track ran from 2003 to 2007 and was funded by Grant ITR-0325160 of the National Science Foundation (NSF) Information Technology Research (ITR) program. The track test collections can still be obtained. The protocol and data files were updated in late 2008 to reflect the end of the track, but still might have some jargon and tenses of writing from during the time the track was running.

Proceedings of the BioNLP 2009 Workshop Companion Volume for Shared Task

, Proceedings of the BioNLP 2009 Workshop Companion Volume for Shared Task, , Boulder, Colorado, Association for Computational Linguistics, June, 2009.

Overview of BioNLP'09 Shared Task on Event Extraction

Kim, J. - D., T. Ohta, S. Pyysalo, Y. Kano, and J. 'ichi Tsujii, "Overview of BioNLP'09 Shared Task on Event Extraction", Proceedings of the BioNLP 2009 Workshop Companion Volume for Shared Task, Boulder, Colorado, Association for Computational Linguistics, pp. 1–9, June, 2009.

Overview of the Entity Relations (REL) supporting task of BioNLP Shared Task 2011

Pyysalo, S., T. Ohta, and J. 'ichi Tsujii, "Overview of the Entity Relations (REL) supporting task of BioNLP Shared Task 2011", Proceedings of BioNLP Shared Task 2011 Workshop, Portland, Oregon, USA, Association for Computational Linguistics, pp. 83–88, June, 2011.

Overview of BioNLP 2011 Protein Coreference Shared Task

Nguyen, N., J. - D. Kim, and J. 'ichi Tsujii, "Overview of BioNLP 2011 Protein Coreference Shared Task", Proceedings of BioNLP Shared Task 2011 Workshop, Portland, Oregon, USA, Association for Computational Linguistics, pp. 74–82, June, 2011.
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