Information extraction, Event extraction, Ontologies, Lexicons, Coreference Resolution, Summarization, Coding, De-identification, Named entity extraction, Semantic analysis, Disambiguation, Medical term mapping, Data, Noun phrase chunking, Semantic role labeling, Morphological Analysis, Data annotation, Data collection, Parsing, Event

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Extraction of named entities from tables in gene mutation literature

Wong, W., D. Martinez, and L. Cavedon, "Extraction of named entities from tables in gene mutation literature", Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing: Association for Computational Linguistics} maptags={Information_extraction, pp. 46–54, 2009.

Learning the scope of hedge cues in biomedical texts

Morante, R., and W. Daelemans, "Learning the scope of hedge cues in biomedical texts", Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing, Stroudsburg, PA, USA, Association for Computational Linguistics, pp. 28–36, 2009.

ONYX: a system for the semantic analysis of clinical text

Christensen, L. M., H. Harkema, P. J. Haug, J. Y. Irwin, and W. W. Chapman, "ONYX: a system for the semantic analysis of clinical text", Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing, Stroudsburg, PA, USA, Association for Computational Linguistics, pp. 19–27, 2009.

Distinguishing historical from current problems in clinical reports: which textual features help?

Mowery, D. L., H. Harkema, J. N. Dowling, J. L. Lustgarten, and W. W. Chapman, "Distinguishing historical from current problems in clinical reports: which textual features help?", Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing, Stroudsburg, PA, USA, Association for Computational Linguistics, pp. 10–18, 2009.

Static relations: a piece in the biomedical information extraction puzzle

Pyysalo, S., T. Ohta, J. - D. Kim, and J. 'ichi Tsujii, "Static relations: a piece in the biomedical information extraction puzzle", Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing, Stroudsburg, PA, USA, Association for Computational Linguistics, pp. 1–9, 2009.

Species disambiguation for biomedical term identification

Wang, X., and M. Matthews, "Species disambiguation for biomedical term identification", Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing: Association for Computational Linguistics, pp. 71–79, 2008.
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