Information extraction, Event extraction, Ontologies, Lexicons, Coreference Resolution, Summarization, Coding, De-identification, Named entity extraction, Semantic analysis, Disambiguation, Medical term mapping, Data, Noun phrase chunking, Semantic role labeling, Morphological Analysis, Data annotation, Data collection, Parsing, Event

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Combining independent syntactic and semantic annotation schemes

Verhagen, M., A. Stubbs, and J. Pustejovsky, "Combining independent syntactic and semantic annotation schemes", Proceedings of the Linguistic Annotation Workshop: Association for Computational Linguistics, pp. 109–112, 2007.

Coarse-to-fine n-best parsing and MaxEnt discriminative reranking

Charniak, E., and M. Johnson, "Coarse-to-fine n-best parsing and MaxEnt discriminative reranking", Proceedings of the 43rd Annual Meeting on Association for Computational Linguistics: Association for Computational Linguistics, pp. 173–180, 2005.

Integrated annotation for biomedical information extraction

Kulick, S., A. Bies, M. Liberman, M. Mandel, R. McDonald, M. Palmer, A. Schein, L. Ungar, S. Winters, and P. White, "Integrated annotation for biomedical information extraction", Proc. of the Human Language Technology Conference and the Annual Meeting of the North American Chapter of the Association for Computational Linguistics (HLT/NAACL), 2004.

Applying the TARSQI Toolkit to Augment Text Mining of EHRs

Stubbs, A., and B. Harshfield, "Applying the TARSQI Toolkit to Augment Text Mining of EHRs", Proceedings of the 2010 Workshop on Biomedical Natural Language Processing, Uppsala, Sweden, Association for Computational Linguistics, pp. 141–143, July, 2010.

Scaling up Biomedical Event Extraction to the Entire PubMed

Björne, J., F. Ginter, S. Pyysalo, J. 'ichi Tsujii, and T. Salakoski, "Scaling up Biomedical Event Extraction to the Entire PubMed", Proceedings of the 2010 Workshop on Biomedical Natural Language Processing, Uppsala, Sweden, Association for Computational Linguistics, pp. 28–36, July, 2010.
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